J4_6LSR_009
3D structure
- PDB id
- 6LSR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- CUAAG*UUGA(PSU)*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 6LSR|1|2|A|4234
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6LSR_009 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.2085
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.1
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
6LSR|1|2|C|4231
6LSR|1|2|U|4232
6LSR|1|2|A|4233
6LSR|1|2|A|4234
6LSR|1|2|G|4235
*
6LSR|1|2|U|4289
6LSR|1|2|U|4290
6LSR|1|2|G|4291
6LSR|1|2|A|4292
6LSR|1|2|PSU|4293
*
6LSR|1|2|A|4317
6LSR|1|2|C|4318
6LSR|1|2|C|4319
*
6LSR|1|2|G|4328
6LSR|1|2|G|4329
6LSR|1|2|G|4330
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 3
- 60S ribosomal export protein NMD3
- Chain C
- 60S ribosomal protein L29
- Chain W
- 60S ribosomal protein L36a
- Chain c
- 60S ribosomal protein L21
- Chain r
- 60S ribosomal protein L5
Coloring options: