J4_6M62_006
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAA*UC*GCU*AUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6M62_006 not in the Motif Atlas
- Homologous match to J4_8P9A_020
- Geometric discrepancy: 0.134
- The information below is about J4_8P9A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_65356.1
- Basepair signature
- cWW-tSS-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6M62|1|1|U|3010
6M62|1|1|A|3011
6M62|1|1|A|3012
*
6M62|1|1|U|3042
6M62|1|1|C|3043
*
6M62|1|1|G|3098
6M62|1|1|C|3099
6M62|1|1|U|3100
*
6M62|1|1|A|3134
6M62|1|1|U|3135
6M62|1|1|G|3136
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain O
- 60S ribosomal protein L16-A
- Chain V
- 60S ribosomal protein L23-A
- Chain z
- UPF0642 protein YBL028C
Coloring options: