3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAG*CAUGUG*CAAAG*CGC
Length
17 nucleotides
Bulged bases
6N1D|1|A16S|A|197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6N1D_002 not in the Motif Atlas
Homologous match to J4_4LFB_002
Geometric discrepancy: 0.1468
The information below is about J4_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_88771.1
Basepair signature
cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
Number of instances in this motif group
1

Unit IDs

6N1D|1|A16S|G|142
6N1D|1|A16S|A|143
6N1D|1|A16S|G|144
*
6N1D|1|A16S|C|178
6N1D|1|A16S|A|179
6N1D|1|A16S|U|180
6N1D|1|A16S|G|181
6N1D|1|A16S|U|182
6N1D|1|A16S|G|183
*
6N1D|1|A16S|C|194
6N1D|1|A16S|A|195
6N1D|1|A16S|A|196
6N1D|1|A16S|A|197
6N1D|1|A16S|G|198
*
6N1D|1|A16S|C|219
6N1D|1|A16S|G|220
6N1D|1|A16S|C|221

Current chains

Chain A16S
16S rRNA

Nearby chains

Chain AS20
30S ribosomal protein S20

Coloring options:


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