J4_6N1D_013
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 6N1D|1|A23S|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6N1D_013 not in the Motif Atlas
- Homologous match to J4_4WF9_008
- Geometric discrepancy: 0.2017
- The information below is about J4_4WF9_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6N1D|1|A23S|C|2285
6N1D|1|A23S|A|2286
6N1D|1|A23S|A|2287
6N1D|1|A23S|A|2288
6N1D|1|A23S|G|2289
*
6N1D|1|A23S|C|2343
6N1D|1|A23S|U|2344
6N1D|1|A23S|G|2345
6N1D|1|A23S|A|2346
6N1D|1|A23S|C|2347
*
6N1D|1|A23S|G|2370
6N1D|1|A23S|G|2371
6N1D|1|A23S|G|2372
*
6N1D|1|A23S|C|2381
6N1D|1|A23S|G|2382
6N1D|1|A23S|G|2383
Current chains
- Chain A23S
- 23S rRNA
Nearby chains
- Chain AL05
- 50S ribosomal protein L5
- Chain AL18
- 50S ribosomal protein L18
- Chain AL27
- 50S ribosomal protein L27
- Chain AL33
- 50S ribosomal protein L33
- Chain AL35
- 50S ribosomal protein L35
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