J4_6N1D_026

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6N1D_026 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0944

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6N1D|1|B23S|G|1772
6N1D|1|B23S|A|1773
6N1D|1|B23S|C|1774
6N1D|1|B23S|U|1775
6N1D|1|B23S|G|1776
*
6N1D|1|B23S|C|1788
6N1D|1|B23S|A|1789
6N1D|1|B23S|C|1790
6N1D|1|B23S|A|1791
6N1D|1|B23S|G|1792
*
6N1D|1|B23S|C|1827
6N1D|1|B23S|G|1828
6N1D|1|B23S|A|1829
6N1D|1|B23S|C|1830
*
6N1D|1|B23S|G|1975
6N1D|1|B23S|U|1976
6N1D|1|B23S|A|1977
6N1D|1|B23S|A|1978
6N1D|1|B23S|C|1979

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain B16S

Small subunit ribosomal RNA; SSU rRNA

Chain BL02

50S ribosomal protein L2