J4_6NUO_009

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

6NUO|1|RA|U|1387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6NUO_009 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0788

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6NUO|1|RA|U|1359
6NUO|1|RA|C|1360
*
6NUO|1|RA|G|1384
6NUO|1|RA|G|1385
6NUO|1|RA|U|1386
6NUO|1|RA|U|1387
6NUO|1|RA|A|1388
6NUO|1|RA|G|1389
*
6NUO|1|RA|C|1450
6NUO|1|RA|U|1451
*
6NUO|1|RA|A|1643
6NUO|1|RA|C|1644
6NUO|1|RA|C|1645
6NUO|1|RA|C|1646
6NUO|1|RA|G|1647
6NUO|1|RA|U|1648
6NUO|1|RA|A|1649

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23