J4_6OGI_007

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OGI_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0973

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6OGI|1|1|A|1772
6OGI|1|1|A|1773
6OGI|1|1|C|1774
6OGI|1|1|U|1775
6OGI|1|1|G|1776
*
6OGI|1|1|C|1788
6OGI|1|1|A|1789
6OGI|1|1|C|1790
6OGI|1|1|A|1791
6OGI|1|1|G|1792
*
6OGI|1|1|U|1827
6OGI|1|1|G|1828
6OGI|1|1|A|1829
6OGI|1|1|C|1830
*
6OGI|1|1|G|1975
6OGI|1|1|U|1976
6OGI|1|1|A|1977
6OGI|1|1|A|1978
6OGI|1|1|U|1979

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2