J4_6OIG_008

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GUG

Length

16 nucleotides

Bulged bases

6OIG|1|5|A|2657

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OIG_008 not in the Motif Atlas

Homologous match to J4_8P9A_019

Geometric discrepancy: 0.183

The information below is about J4_8P9A_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_59590.1

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F

Number of instances in this motif group

3

Unit IDs

6OIG|1|5|C|2654
6OIG|1|5|U|2655
6OIG|1|5|A|2656
6OIG|1|5|A|2657
6OIG|1|5|G|2658
*
6OIG|1|5|U|2712
6OIG|1|5|U|2713
6OIG|1|5|G|2714
6OIG|1|5|A|2715
6OIG|1|5|U|2716
*
6OIG|1|5|A|2740
6OIG|1|5|C|2741
6OIG|1|5|C|2742
*
6OIG|1|5|G|2751
6OIG|1|5|U|2752
6OIG|1|5|G|2753

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain T

60S ribosomal protein L21-A

Chain o

60S ribosomal protein L42-A