J4_6OIG_009

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OIG_009 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.2326

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_37757.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6OIG|1|5|U|3010
6OIG|1|5|A|3011
6OIG|1|5|A|3012
*
6OIG|1|5|U|3042
6OIG|1|5|C|3043
*
6OIG|1|5|G|3098
6OIG|1|5|C|3099
6OIG|1|5|U|3100
*
6OIG|1|5|A|3134
6OIG|1|5|U|3135
6OIG|1|5|G|3136

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L16-A

Chain V

60S ribosomal protein L23-A