J4_6OLE_011
3D structure
- PDB id
- 6OLE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 6OLE|1|t|A|4196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6OLE_011 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.1589
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.1
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
6OLE|1|t|C|4193
6OLE|1|t|U|4194
6OLE|1|t|A|4195
6OLE|1|t|A|4196
6OLE|1|t|G|4197
*
6OLE|1|t|U|4251
6OLE|1|t|U|4252
6OLE|1|t|G|4253
6OLE|1|t|A|4254
6OLE|1|t|U|4255
*
6OLE|1|t|A|4279
6OLE|1|t|C|4280
6OLE|1|t|C|4281
*
6OLE|1|t|G|4290
6OLE|1|t|G|4291
6OLE|1|t|G|4292
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L5
- Chain U
- 60S ribosomal protein L21
- Chain c
- 60S ribosomal protein L29
- Chain p
- 60S ribosomal protein L36a
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