J4_6Q95_011

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

6Q95|1|2|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6Q95_011 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1293

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6Q95|1|2|G|142
6Q95|1|2|A|143
6Q95|1|2|G|144
*
6Q95|1|2|C|178
6Q95|1|2|A|179
6Q95|1|2|U|180
6Q95|1|2|G|181
6Q95|1|2|U|182
6Q95|1|2|G|183
*
6Q95|1|2|C|194
6Q95|1|2|A|195
6Q95|1|2|A|196
6Q95|1|2|A|197
6Q95|1|2|G|198
*
6Q95|1|2|C|219
6Q95|1|2|G|220
6Q95|1|2|C|221

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain y

30S ribosomal protein S20