J4_6Q98_005

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGUUCC*GGGUGAG*CU*AAUCGUAC

Length

23 nucleotides

Bulged bases

6Q98|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6Q98_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.5462

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6Q98|1|1|G|1310
6Q98|1|1|G|1311
6Q98|1|1|U|1312
6Q98|1|1|U|1313
6Q98|1|1|C|1314
6Q98|1|1|C|1315
*
6Q98|1|1|G|1337
6Q98|1|1|G|1338
6Q98|1|1|G|1339
6Q98|1|1|U|1340
6Q98|1|1|G|1341
6Q98|1|1|A|1342
6Q98|1|1|G|1343
*
6Q98|1|1|C|1404
6Q98|1|1|U|1405
*
6Q98|1|1|A|1597
6Q98|1|1|A|1598
6Q98|1|1|U|1599
6Q98|1|1|C|1600
6Q98|1|1|G|1601
6Q98|1|1|U|1602
6Q98|1|1|A|1603
6Q98|1|1|C|1604

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34