J4_6QDW_008

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QDW_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0534

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6QDW|1|b|A|1774
6QDW|1|b|A|1775
6QDW|1|b|C|1776
6QDW|1|b|U|1777
6QDW|1|b|G|1778
*
6QDW|1|b|C|1790
6QDW|1|b|A|1791
6QDW|1|b|C|1792
6QDW|1|b|A|1793
6QDW|1|b|G|1794
*
6QDW|1|b|U|1829
6QDW|1|b|G|1830
6QDW|1|b|A|1831
6QDW|1|b|C|1832
*
6QDW|1|b|G|1979
6QDW|1|b|U|1980
6QDW|1|b|A|1981
6QDW|1|b|A|1982
6QDW|1|b|U|1983

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2