J4_6S0X_003

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

6S0X|1|A|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6S0X_003 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.0863

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6S0X|1|A|G|1347
6S0X|1|A|U|1348
6S0X|1|A|U|1349
6S0X|1|A|U|1350
6S0X|1|A|C|1351
*
6S0X|1|A|G|1375
6S0X|1|A|G|1376
6S0X|1|A|U|1377
6S0X|1|A|U|1378
6S0X|1|A|A|1379
6S0X|1|A|G|1380
*
6S0X|1|A|C|1441
6S0X|1|A|C|1442
*
6S0X|1|A|G|1641
6S0X|1|A|C|1642
6S0X|1|A|C|1643
6S0X|1|A|C|1644
6S0X|1|A|G|1645
6S0X|1|A|U|1646
6S0X|1|A|A|1647
6S0X|1|A|C|1648

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain R

50S ribosomal protein L23