J4_6SKF_006
3D structure
- PDB id
- 6SKF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CAGCAUAG*C(4AC)*GUGUC*GG
- Length
- 17 nucleotides
- Bulged bases
- 6SKF|1|BA|U|1410, 6SKF|1|BA|A|1411
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SKF_006 not in the Motif Atlas
- Homologous match to J4_4V9F_003
- Geometric discrepancy: 0.1756
- The information below is about J4_4V9F_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_75426.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SKF|1|BA|C|1405
6SKF|1|BA|A|1406
6SKF|1|BA|G|1407
6SKF|1|BA|C|1408
6SKF|1|BA|A|1409
6SKF|1|BA|U|1410
6SKF|1|BA|A|1411
6SKF|1|BA|G|1412
*
6SKF|1|BA|C|1430
6SKF|1|BA|4AC|1431
*
6SKF|1|BA|G|1791
6SKF|1|BA|U|1792
6SKF|1|BA|G|1793
6SKF|1|BA|U|1794
6SKF|1|BA|C|1795
*
6SKF|1|BA|G|2122
6SKF|1|BA|G|2123
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BS
- 50S ribosomal protein L19e
- Chain BV
- 50S ribosomal protein L22
- Chain Bc
- 50S ribosomal protein L31e
Coloring options: