J4_6SPF_007

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SPF_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.053

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6SPF|1|A|G|1759
6SPF|1|A|A|1760
6SPF|1|A|C|1761
6SPF|1|A|U|1762
6SPF|1|A|G|1763
*
6SPF|1|A|C|1775
6SPF|1|A|A|1776
6SPF|1|A|C|1777
6SPF|1|A|A|1778
6SPF|1|A|G|1779
*
6SPF|1|A|U|1814
6SPF|1|A|G|1815
6SPF|1|A|A|1816
6SPF|1|A|C|1817
*
6SPF|1|A|G|1962
6SPF|1|A|U|1963
6SPF|1|A|A|1964
6SPF|1|A|A|1965
6SPF|1|A|C|1966

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2