J4_6SPG_007

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SPG_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0962

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6SPG|1|A|G|1759
6SPG|1|A|A|1760
6SPG|1|A|C|1761
6SPG|1|A|U|1762
6SPG|1|A|G|1763
*
6SPG|1|A|C|1775
6SPG|1|A|A|1776
6SPG|1|A|C|1777
6SPG|1|A|A|1778
6SPG|1|A|G|1779
*
6SPG|1|A|U|1814
6SPG|1|A|G|1815
6SPG|1|A|A|1816
6SPG|1|A|C|1817
*
6SPG|1|A|G|1962
6SPG|1|A|U|1963
6SPG|1|A|A|1964
6SPG|1|A|A|1965
6SPG|1|A|C|1966

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2