J4_6SV4_004
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6SV4|1|2b|A|623, 6SV4|1|2b|A|1026, 6SV4|1|2b|U|1029, 6SV4|1|2b|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SV4_004 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.0933
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
6SV4|1|2b|A|622
6SV4|1|2b|A|623
6SV4|1|2b|G|624
*
6SV4|1|2b|C|975
6SV4|1|2b|G|976
6SV4|1|2b|A|977
6SV4|1|2b|A|978
6SV4|1|2b|A|979
6SV4|1|2b|G|980
*
6SV4|1|2b|C|1021
6SV4|1|2b|C|1022
6SV4|1|2b|A|1023
6SV4|1|2b|U|1024
6SV4|1|2b|A|1025
6SV4|1|2b|A|1026
6SV4|1|2b|A|1027
6SV4|1|2b|C|1028
6SV4|1|2b|U|1029
6SV4|1|2b|A|1030
6SV4|1|2b|U|1031
6SV4|1|2b|G|1032
*
6SV4|1|2b|U|1103
6SV4|1|2b|U|1104
Current chains
- Chain 2b
- 18S rRNA
Nearby chains
- Chain XS
- 60S ribosomal protein L41-B
- Chain XT
- 60S ribosomal protein L43-A
- Chain Xb
- 40S ribosomal protein S11-A
- Chain YQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain Yb
- 40S ribosomal protein S13
- Chain Zb
- 40S ribosomal protein S14-A
- Chain bb
- 40S ribosomal protein S22-A
- Chain cb
- 40S ribosomal protein S23-A
- Chain eb
- 40S ribosomal protein S26-A
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