J4_6TC3_011

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TC3_011 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0503

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6TC3|1|23S1|A|1772
6TC3|1|23S1|A|1773
6TC3|1|23S1|C|1774
6TC3|1|23S1|U|1775
6TC3|1|23S1|G|1776
*
6TC3|1|23S1|C|1788
6TC3|1|23S1|A|1789
6TC3|1|23S1|C|1790
6TC3|1|23S1|A|1791
6TC3|1|23S1|G|1792
*
6TC3|1|23S1|U|1827
6TC3|1|23S1|G|1828
6TC3|1|23S1|A|1829
6TC3|1|23S1|C|1830
*
6TC3|1|23S1|G|1975
6TC3|1|23S1|U|1976
6TC3|1|23S1|A|1977
6TC3|1|23S1|A|1978
6TC3|1|23S1|U|1979

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain 16S1

Small subunit ribosomal RNA; SSU rRNA

Chain L021

50S ribosomal protein L2