J4_6U48_008

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6U48_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.059

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6U48|1|CA|A|1772
6U48|1|CA|A|1773
6U48|1|CA|C|1774
6U48|1|CA|U|1775
6U48|1|CA|G|1776
*
6U48|1|CA|C|1788
6U48|1|CA|A|1789
6U48|1|CA|C|1790
6U48|1|CA|A|1791
6U48|1|CA|G|1792
*
6U48|1|CA|U|1827
6U48|1|CA|G|1828
6U48|1|CA|A|1829
6U48|1|CA|C|1830
*
6U48|1|CA|G|1975
6U48|1|CA|U|1976
6U48|1|CA|A|1977
6U48|1|CA|A|1978
6U48|1|CA|U|1979

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein uL2