J4_6U48_010
3D structure
- PDB id
- 6U48 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S with phazolicin (PHZ) bound in exit tunnel
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 6U48|1|CA|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6U48_010 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.1044
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6U48|1|CA|C|2285
6U48|1|CA|G|2286
6U48|1|CA|A|2287
6U48|1|CA|A|2288
6U48|1|CA|G|2289
*
6U48|1|CA|U|2343
6U48|1|CA|U|2344
6U48|1|CA|G|2345
6U48|1|CA|A|2346
6U48|1|CA|C|2347
*
6U48|1|CA|G|2370
6U48|1|CA|G|2371
6U48|1|CA|U|2372
*
6U48|1|CA|A|2381
6U48|1|CA|G|2382
6U48|1|CA|G|2383
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain C2
- 50S ribosomal protein bL33
- Chain C4
- 50S ribosomal protein bL35
- Chain CP
- 50S ribosomal protein uL18
- Chain CX
- 50S ribosomal protein bL27
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