J4_6V3D_007
3D structure
- PDB id
- 6V3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- AACUG*CAUAG*UGAU*AUAAU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6V3D_007 not in the Motif Atlas
- Homologous match to J4_5J7L_025
- Geometric discrepancy: 0.1056
- The information below is about J4_5J7L_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6V3D|1|AN1|A|1768
6V3D|1|AN1|A|1769
6V3D|1|AN1|C|1770
6V3D|1|AN1|U|1771
6V3D|1|AN1|G|1772
*
6V3D|1|AN1|C|1784
6V3D|1|AN1|A|1785
6V3D|1|AN1|U|1786
6V3D|1|AN1|A|1787
6V3D|1|AN1|G|1788
*
6V3D|1|AN1|U|1823
6V3D|1|AN1|G|1824
6V3D|1|AN1|A|1825
6V3D|1|AN1|U|1826
*
6V3D|1|AN1|A|1971
6V3D|1|AN1|U|1972
6V3D|1|AN1|A|1973
6V3D|1|AN1|A|1974
6V3D|1|AN1|U|1975
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
Coloring options: