J4_6VWN_010

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VWN_010 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1009

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6VWN|1|2|A|1772
6VWN|1|2|A|1773
6VWN|1|2|C|1774
6VWN|1|2|U|1775
6VWN|1|2|G|1776
*
6VWN|1|2|C|1788
6VWN|1|2|A|1789
6VWN|1|2|C|1790
6VWN|1|2|A|1791
6VWN|1|2|G|1792
*
6VWN|1|2|U|1827
6VWN|1|2|G|1828
6VWN|1|2|A|1829
6VWN|1|2|C|1830
*
6VWN|1|2|G|1975
6VWN|1|2|U|1976
6VWN|1|2|A|1977
6VWN|1|2|A|1978
6VWN|1|2|U|1979

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 1

Small subunit ribosomal RNA; SSU rRNA

Chain A

50S ribosomal protein L2