3D structure

PDB id
6VWN (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CGAAG*UUGAC*GGU*AGG
Length
16 nucleotides
Bulged bases
6VWN|1|2|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6VWN_012 not in the Motif Atlas
Homologous match to J4_5J7L_027
Geometric discrepancy: 0.1151
The information below is about J4_5J7L_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

6VWN|1|2|C|2285
6VWN|1|2|G|2286
6VWN|1|2|A|2287
6VWN|1|2|A|2288
6VWN|1|2|G|2289
*
6VWN|1|2|U|2343
6VWN|1|2|U|2344
6VWN|1|2|G|2345
6VWN|1|2|A|2346
6VWN|1|2|C|2347
*
6VWN|1|2|G|2370
6VWN|1|2|G|2371
6VWN|1|2|U|2372
*
6VWN|1|2|A|2381
6VWN|1|2|G|2382
6VWN|1|2|G|2383

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain AB
50S ribosomal protein L35
Chain M
50S ribosomal protein L18
Chain U
50S ribosomal protein L27
Chain Z
50S ribosomal protein L33

Coloring options:


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