J4_6VYY_014
3D structure
- PDB id
- 6VYY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.9 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 6VYY|1|a|A|2288, 6VYY|1|a|G|2382
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6VYY_014 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.0832
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6VYY|1|a|C|2285
6VYY|1|a|G|2286
6VYY|1|a|A|2287
6VYY|1|a|A|2288
6VYY|1|a|G|2289
*
6VYY|1|a|U|2343
6VYY|1|a|U|2344
6VYY|1|a|G|2345
6VYY|1|a|A|2346
6VYY|1|a|C|2347
*
6VYY|1|a|G|2370
6VYY|1|a|G|2371
6VYY|1|a|U|2372
*
6VYY|1|a|A|2381
6VYY|1|a|G|2382
6VYY|1|a|G|2383
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain b
- 50S ribosomal protein L27
- Chain k
- 50S ribosomal protein L33
- Chain o
- 50S ribosomal protein L35
- Chain x
- 50S ribosomal protein L18
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