J4_6W6L_009

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GGG

Length

16 nucleotides

Bulged bases

6W6L|1|t|A|4196

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6W6L_009 not in the Motif Atlas

Homologous match to J4_8P9A_019

Geometric discrepancy: 0.1657

The information below is about J4_8P9A_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_59590.1

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F

Number of instances in this motif group

3

Unit IDs

6W6L|1|t|C|4193
6W6L|1|t|U|4194
6W6L|1|t|A|4195
6W6L|1|t|A|4196
6W6L|1|t|G|4197
*
6W6L|1|t|U|4251
6W6L|1|t|U|4252
6W6L|1|t|G|4253
6W6L|1|t|A|4254
6W6L|1|t|U|4255
*
6W6L|1|t|A|4279
6W6L|1|t|C|4280
6W6L|1|t|C|4281
*
6W6L|1|t|G|4290
6W6L|1|t|G|4291
6W6L|1|t|G|4292

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L5

Chain U

60S ribosomal protein L21

Chain p

60S ribosomal protein L36a