3D structure

PDB id
6WDB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CGAAG*UUGAC*GGU*AGG
Length
16 nucleotides
Bulged bases
6WDB|1|1|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6WDB_009 not in the Motif Atlas
Homologous match to J4_9DFE_009
Geometric discrepancy: 0.1712
The information below is about J4_9DFE_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

6WDB|1|1|C|2285
6WDB|1|1|G|2286
6WDB|1|1|A|2287
6WDB|1|1|A|2288
6WDB|1|1|G|2289
*
6WDB|1|1|U|2343
6WDB|1|1|U|2344
6WDB|1|1|G|2345
6WDB|1|1|A|2346
6WDB|1|1|C|2347
*
6WDB|1|1|G|2370
6WDB|1|1|G|2371
6WDB|1|1|U|2372
*
6WDB|1|1|A|2381
6WDB|1|1|G|2382
6WDB|1|1|G|2383

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L33
Chain E
50S ribosomal protein L35
Chain o
50S ribosomal protein L18
Chain w
50S ribosomal protein L27

Coloring options:


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