J4_6WDB_009
3D structure
- PDB id
- 6WDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 6WDB|1|1|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WDB_009 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.1712
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6WDB|1|1|C|2285
6WDB|1|1|G|2286
6WDB|1|1|A|2287
6WDB|1|1|A|2288
6WDB|1|1|G|2289
*
6WDB|1|1|U|2343
6WDB|1|1|U|2344
6WDB|1|1|G|2345
6WDB|1|1|A|2346
6WDB|1|1|C|2347
*
6WDB|1|1|G|2370
6WDB|1|1|G|2371
6WDB|1|1|U|2372
*
6WDB|1|1|A|2381
6WDB|1|1|G|2382
6WDB|1|1|G|2383
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L33
- Chain E
- 50S ribosomal protein L35
- Chain o
- 50S ribosomal protein L18
- Chain w
- 50S ribosomal protein L27
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