J4_6WDC_007

3D structure

PDB id

6WDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WDC_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1124

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6WDC|1|1|A|1772
6WDC|1|1|A|1773
6WDC|1|1|C|1774
6WDC|1|1|U|1775
6WDC|1|1|G|1776
*
6WDC|1|1|C|1788
6WDC|1|1|A|1789
6WDC|1|1|C|1790
6WDC|1|1|A|1791
6WDC|1|1|G|1792
*
6WDC|1|1|U|1827
6WDC|1|1|G|1828
6WDC|1|1|A|1829
6WDC|1|1|C|1830
*
6WDC|1|1|G|1975
6WDC|1|1|U|1976
6WDC|1|1|A|1977
6WDC|1|1|A|1978
6WDC|1|1|U|1979

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2