J4_6WOO_001

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUUAAAUC*GCC*GUAAC*GG

Length

19 nucleotides

Bulged bases

6WOO|1|2|A|358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WOO_001 not in the Motif Atlas

Homologous match to J4_8P9A_021

Geometric discrepancy: 0.1012

The information below is about J4_8P9A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.1

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW

Number of instances in this motif group

2

Unit IDs

6WOO|1|2|C|98
6WOO|1|2|A|99
6WOO|1|2|U|100
6WOO|1|2|U|101
6WOO|1|2|A|102
6WOO|1|2|A|103
6WOO|1|2|A|104
6WOO|1|2|U|105
6WOO|1|2|C|106
*
6WOO|1|2|G|306
6WOO|1|2|C|307
6WOO|1|2|C|308
*
6WOO|1|2|G|356
6WOO|1|2|U|357
6WOO|1|2|A|358
6WOO|1|2|A|359
6WOO|1|2|C|360
*
6WOO|1|2|G|382
6WOO|1|2|G|383

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain II

eS8

Chain LL

uS17

Chain XX

uS12