J4_6WOO_014

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WOO_014 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.1012

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_65356.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6WOO|1|5|U|3010
6WOO|1|5|A|3011
6WOO|1|5|A|3012
*
6WOO|1|5|U|3042
6WOO|1|5|C|3043
*
6WOO|1|5|G|3098
6WOO|1|5|C|3099
6WOO|1|5|U|3100
*
6WOO|1|5|A|3134
6WOO|1|5|U|3135
6WOO|1|5|G|3136

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13

Chain V

uL14