J4_6WQQ_006

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WQQ_006 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0903

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6WQQ|1|1|G|1799
6WQQ|1|1|A|1800
6WQQ|1|1|C|1801
6WQQ|1|1|U|1802
6WQQ|1|1|G|1803
*
6WQQ|1|1|C|1815
6WQQ|1|1|A|1816
6WQQ|1|1|C|1817
6WQQ|1|1|A|1818
6WQQ|1|1|G|1819
*
6WQQ|1|1|U|1854
6WQQ|1|1|G|1855
6WQQ|1|1|A|1856
6WQQ|1|1|C|1857
*
6WQQ|1|1|G|2002
6WQQ|1|1|U|2003
6WQQ|1|1|A|2004
6WQQ|1|1|A|2005
6WQQ|1|1|C|2006

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2