J4_6WQQ_008
3D structure
- PDB id
- 6WQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 6WQQ|1|1|A|2315
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WQQ_008 not in the Motif Atlas
- Homologous match to J4_4WF9_008
- Geometric discrepancy: 0.158
- The information below is about J4_4WF9_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6WQQ|1|1|C|2312
6WQQ|1|1|A|2313
6WQQ|1|1|A|2314
6WQQ|1|1|A|2315
6WQQ|1|1|G|2316
*
6WQQ|1|1|U|2370
6WQQ|1|1|U|2371
6WQQ|1|1|G|2372
6WQQ|1|1|A|2373
6WQQ|1|1|C|2374
*
6WQQ|1|1|G|2397
6WQQ|1|1|G|2398
6WQQ|1|1|G|2399
*
6WQQ|1|1|C|2408
6WQQ|1|1|G|2409
6WQQ|1|1|G|2410
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain I
- 50S ribosomal protein L27
- Chain O
- 50S ribosomal protein L33
- Chain Q
- 50S ribosomal protein L35
- Chain a
- 50S ribosomal protein L18
Coloring options: