J4_6XIR_008
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 6XIR|1|1|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6XIR_008 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.1199
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6XIR|1|1|C|2654
6XIR|1|1|U|2655
6XIR|1|1|A|2656
6XIR|1|1|A|2657
6XIR|1|1|G|2658
*
6XIR|1|1|U|2712
6XIR|1|1|U|2713
6XIR|1|1|G|2714
6XIR|1|1|A|2715
6XIR|1|1|U|2716
*
6XIR|1|1|A|2740
6XIR|1|1|C|2741
6XIR|1|1|C|2742
*
6XIR|1|1|G|2751
6XIR|1|1|U|2752
6XIR|1|1|G|2753
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain D
- RPL5 isoform 1
- Chain T
- 60S ribosomal protein L21-A
- Chain b
- RPL29 isoform 1
- Chain o
- 60S ribosomal protein L42-A
Coloring options: