3D structure

PDB id
6ZQE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.1 Å

Loop

Sequence
CAUUAAAUC*GCC*GUAAC*GG
Length
19 nucleotides
Bulged bases
6ZQE|1|D3|A|359
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6ZQE_001 not in the Motif Atlas
Homologous match to J4_8P9A_021
Geometric discrepancy: 0.2232
The information below is about J4_8P9A_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_15241.1
Basepair signature
cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
Number of instances in this motif group
2

Unit IDs

6ZQE|1|D3|C|99
6ZQE|1|D3|A|100
6ZQE|1|D3|U|101
6ZQE|1|D3|U|102
6ZQE|1|D3|A|103
6ZQE|1|D3|A|104
6ZQE|1|D3|A|105
6ZQE|1|D3|U|106
6ZQE|1|D3|C|107
*
6ZQE|1|D3|G|307
6ZQE|1|D3|C|308
6ZQE|1|D3|C|309
*
6ZQE|1|D3|G|357
6ZQE|1|D3|U|358
6ZQE|1|D3|A|359
6ZQE|1|D3|A|360
6ZQE|1|D3|C|361
*
6ZQE|1|D3|G|383
6ZQE|1|D3|G|384

Current chains

Chain D3
18S rRNA

Nearby chains

Chain CL
Ribosome biogenesis protein BMS1
Chain DE
40S ribosomal protein S4-A
Chain DI
40S ribosomal protein S8-A
Chain DL
40S ribosomal protein S11-A
Chain DX
40S ribosomal protein S23-A
Chain JD
Probable ATP-dependent RNA helicase DHR1

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2823 s