3D structure

PDB id
6ZVI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mbf1-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CAUUAAAUC*GCC*GUAAC*GG
Length
19 nucleotides
Bulged bases
6ZVI|1|h|A|359
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6ZVI_003 not in the Motif Atlas
Homologous match to J4_8P9A_021
Geometric discrepancy: 0.0784
The information below is about J4_8P9A_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_15241.1
Basepair signature
cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
Number of instances in this motif group
2

Unit IDs

6ZVI|1|h|C|99
6ZVI|1|h|A|100
6ZVI|1|h|U|101
6ZVI|1|h|U|102
6ZVI|1|h|A|103
6ZVI|1|h|A|104
6ZVI|1|h|A|105
6ZVI|1|h|U|106
6ZVI|1|h|C|107
*
6ZVI|1|h|G|307
6ZVI|1|h|C|308
6ZVI|1|h|C|309
*
6ZVI|1|h|G|357
6ZVI|1|h|U|358
6ZVI|1|h|A|359
6ZVI|1|h|A|360
6ZVI|1|h|C|361
*
6ZVI|1|h|G|383
6ZVI|1|h|G|384

Current chains

Chain h
18S rRNA

Nearby chains

Chain H
40S ribosomal protein S23-A
Chain m
40S ribosomal protein S4-A
Chain q
40S ribosomal protein S8-A
Chain t
40S ribosomal protein S11-A

Coloring options:


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