J4_7AQD_001

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

7AQD|1|A|C|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AQD_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1428

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

7AQD|1|A|C|271
7AQD|1|A|C|272
*
7AQD|1|A|G|417
7AQD|1|A|A|418
7AQD|1|A|G|419
7AQD|1|A|U|420
7AQD|1|A|A|421
7AQD|1|A|C|422
*
7AQD|1|A|G|446
7AQD|1|A|G|447
7AQD|1|A|A|448
7AQD|1|A|A|449
7AQD|1|A|U|450
7AQD|1|A|C|451
7AQD|1|A|C|452
7AQD|1|A|G|453
*
7AQD|1|A|C|468
7AQD|1|A|A|469
7AQD|1|A|A|470
7AQD|1|A|G|471

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28