J4_7AZO_011

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

7AZO|1|23SA|U|1390

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AZO_011 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0754

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7AZO|1|23SA|U|1362
7AZO|1|23SA|C|1363
*
7AZO|1|23SA|G|1387
7AZO|1|23SA|G|1388
7AZO|1|23SA|U|1389
7AZO|1|23SA|U|1390
7AZO|1|23SA|A|1391
7AZO|1|23SA|G|1392
*
7AZO|1|23SA|C|1453
7AZO|1|23SA|U|1454
*
7AZO|1|23SA|A|1646
7AZO|1|23SA|C|1647
7AZO|1|23SA|C|1648
7AZO|1|23SA|C|1649
7AZO|1|23SA|G|1650
7AZO|1|23SA|U|1651
7AZO|1|23SA|A|1652

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L23A

50S ribosomal protein L23

Chain L34A

50S ribosomal protein L34