J4_7AZO_028
3D structure
- PDB id
- 7AZO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 7AZO|1|ESIB|U|8, 7AZO|1|ESIB|U|47, 7AZO|1|ESIB|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7AZO_028 not in the Motif Atlas
- Homologous match to J4_5EL4_030
- Geometric discrepancy: 0.2724
- The information below is about J4_5EL4_030
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.25
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 56
Unit IDs
7AZO|1|ESIB|A|7
7AZO|1|ESIB|U|8
7AZO|1|ESIB|A|9
7AZO|1|ESIB|G|10
*
7AZO|1|ESIB|C|25
7AZO|1|ESIB|A|26
7AZO|1|ESIB|G|27
*
7AZO|1|ESIB|C|43
7AZO|1|ESIB|G|44
7AZO|1|ESIB|U|45
7AZO|1|ESIB|G|46
7AZO|1|ESIB|U|47
7AZO|1|ESIB|C|48
7AZO|1|ESIB|C|49
*
7AZO|1|ESIB|G|65
7AZO|1|ESIB|U|66
Current chains
- Chain ESIB
- Phe-tRNA
Nearby chains
- Chain S7B
- 30S ribosomal protein S7
Coloring options: