J4_7F0D_008
3D structure
- PDB id
- 7F0D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 7F0D|1|A|A|2526
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7F0D_008 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.1215
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7F0D|1|A|C|2523
7F0D|1|A|A|2524
7F0D|1|A|A|2525
7F0D|1|A|A|2526
7F0D|1|A|G|2527
*
7F0D|1|A|U|2581
7F0D|1|A|U|2582
7F0D|1|A|G|2583
7F0D|1|A|A|2584
7F0D|1|A|C|2585
*
7F0D|1|A|G|2608
7F0D|1|A|G|2609
7F0D|1|A|G|2610
*
7F0D|1|A|C|2619
7F0D|1|A|G|2620
7F0D|1|A|G|2621
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain 3
- 50S ribosomal protein L35
- Chain O
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L27
Coloring options: