J4_7K50_007

3D structure

PDB id

7K50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation non-frameshifting(CCA-A) complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7K50_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1096

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7K50|1|1|A|1772
7K50|1|1|A|1773
7K50|1|1|C|1774
7K50|1|1|U|1775
7K50|1|1|G|1776
*
7K50|1|1|C|1788
7K50|1|1|A|1789
7K50|1|1|C|1790
7K50|1|1|A|1791
7K50|1|1|G|1792
*
7K50|1|1|U|1827
7K50|1|1|G|1828
7K50|1|1|A|1829
7K50|1|1|C|1830
*
7K50|1|1|G|1975
7K50|1|1|U|1976
7K50|1|1|A|1977
7K50|1|1|A|1978
7K50|1|1|U|1979

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2