J4_7M4Z_008

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

AACUG*CAUAG*UGAU*AUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7M4Z_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.094

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7M4Z|1|A|A|1768
7M4Z|1|A|A|1769
7M4Z|1|A|C|1770
7M4Z|1|A|U|1771
7M4Z|1|A|G|1772
*
7M4Z|1|A|C|1784
7M4Z|1|A|A|1785
7M4Z|1|A|U|1786
7M4Z|1|A|A|1787
7M4Z|1|A|G|1788
*
7M4Z|1|A|U|1823
7M4Z|1|A|G|1824
7M4Z|1|A|A|1825
7M4Z|1|A|U|1826
*
7M4Z|1|A|A|1971
7M4Z|1|A|U|1972
7M4Z|1|A|A|1973
7M4Z|1|A|A|1974
7M4Z|1|A|U|1975

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2