J4_7NRD_009

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

7NRD|1|LA|A|3011

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NRD_009 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.2022

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_37757.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7NRD|1|LA|U|3010
7NRD|1|LA|A|3011
7NRD|1|LA|A|3012
*
7NRD|1|LA|U|3042
7NRD|1|LA|C|3043
*
7NRD|1|LA|G|3098
7NRD|1|LA|C|3099
7NRD|1|LA|U|3100
*
7NRD|1|LA|A|3134
7NRD|1|LA|U|3135
7NRD|1|LA|G|3136

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LQ

60S ribosomal protein L16-A

Chain LX

60S ribosomal protein L23-A