J4_7O80_015

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAG*UUGA(PSU)*ACC*GGG

Length

16 nucleotides

Bulged bases

7O80|1|B5|A|3980

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7O80_015 not in the Motif Atlas

Homologous match to J4_8P9A_019

Geometric discrepancy: 0.1991

The information below is about J4_8P9A_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_59590.1

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F

Number of instances in this motif group

3

Unit IDs

7O80|1|B5|C|3977
7O80|1|B5|U|3978
7O80|1|B5|A|3979
7O80|1|B5|A|3980
7O80|1|B5|G|3981
*
7O80|1|B5|U|4035
7O80|1|B5|U|4036
7O80|1|B5|G|4037
7O80|1|B5|A|4038
7O80|1|B5|PSU|4039
*
7O80|1|B5|A|4063
7O80|1|B5|C|4064
7O80|1|B5|C|4065
*
7O80|1|B5|G|4074
7O80|1|B5|G|4075
7O80|1|B5|G|4076

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BD

Ribosomal_L18_c domain-containing protein

Chain BT

eL21

Chain Bb

60S ribosomal protein L29

Chain Bo

eL42