J4_7OOD_004

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUUC*GGUUAG*CU*ACCAGUAC

Length

21 nucleotides

Bulged bases

7OOD|1|3|U|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OOD_004 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1187

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7OOD|1|3|G|1338
7OOD|1|3|U|1339
7OOD|1|3|U|1340
7OOD|1|3|U|1341
7OOD|1|3|C|1342
*
7OOD|1|3|G|1366
7OOD|1|3|G|1367
7OOD|1|3|U|1368
7OOD|1|3|U|1369
7OOD|1|3|A|1370
7OOD|1|3|G|1371
*
7OOD|1|3|C|1432
7OOD|1|3|U|1433
*
7OOD|1|3|A|1631
7OOD|1|3|C|1632
7OOD|1|3|C|1633
7OOD|1|3|A|1634
7OOD|1|3|G|1635
7OOD|1|3|U|1636
7OOD|1|3|A|1637
7OOD|1|3|C|1638

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain s

50S ribosomal protein L23

Chain w

50S ribosomal protein L29