J4_7OOD_007
3D structure
- PDB id
- 7OOD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GACUG*CACAA*UGAC*GUAAC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OOD_007 not in the Motif Atlas
- Homologous match to J4_5J7L_025
- Geometric discrepancy: 0.0864
- The information below is about J4_5J7L_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7OOD|1|3|G|1779
7OOD|1|3|A|1780
7OOD|1|3|C|1781
7OOD|1|3|U|1782
7OOD|1|3|G|1783
*
7OOD|1|3|C|1795
7OOD|1|3|A|1796
7OOD|1|3|C|1797
7OOD|1|3|A|1798
7OOD|1|3|A|1799
*
7OOD|1|3|U|1834
7OOD|1|3|G|1835
7OOD|1|3|A|1836
7OOD|1|3|C|1837
*
7OOD|1|3|G|1982
7OOD|1|3|U|1983
7OOD|1|3|A|1984
7OOD|1|3|A|1985
7OOD|1|3|C|1986
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain a
- 50S ribosomal protein L2
Coloring options: