J4_7OOD_009
3D structure
- PDB id
- 7OOD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 7OOD|1|3|A|2296
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OOD_009 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.1696
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7OOD|1|3|C|2293
7OOD|1|3|A|2294
7OOD|1|3|A|2295
7OOD|1|3|A|2296
7OOD|1|3|G|2297
*
7OOD|1|3|U|2351
7OOD|1|3|U|2352
7OOD|1|3|G|2353
7OOD|1|3|A|2354
7OOD|1|3|C|2355
*
7OOD|1|3|G|2378
7OOD|1|3|G|2379
7OOD|1|3|U|2380
*
7OOD|1|3|A|2389
7OOD|1|3|G|2390
7OOD|1|3|G|2391
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L35
- Chain n
- 50S ribosomal protein L18
- Chain u
- 50S ribosomal protein L27
- Chain z
- 50S ribosomal protein L33 1
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