J4_7OSA_002
3D structure
- PDB id
- 7OSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7OSA|1|18S|A|623, 7OSA|1|18S|A|1026, 7OSA|1|18S|C|1028, 7OSA|1|18S|U|1029, 7OSA|1|18S|A|1030, 7OSA|1|18S|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OSA_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.0671
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
7OSA|1|18S|A|622
7OSA|1|18S|A|623
7OSA|1|18S|G|624
*
7OSA|1|18S|C|975
7OSA|1|18S|G|976
7OSA|1|18S|A|977
7OSA|1|18S|A|978
7OSA|1|18S|A|979
7OSA|1|18S|G|980
*
7OSA|1|18S|C|1021
7OSA|1|18S|C|1022
7OSA|1|18S|A|1023
7OSA|1|18S|U|1024
7OSA|1|18S|A|1025
7OSA|1|18S|A|1026
7OSA|1|18S|A|1027
7OSA|1|18S|C|1028
7OSA|1|18S|U|1029
7OSA|1|18S|A|1030
7OSA|1|18S|U|1031
7OSA|1|18S|G|1032
*
7OSA|1|18S|U|1103
7OSA|1|18S|U|1104
Current chains
- Chain 18S
- 18S rRNA
Nearby chains
- Chain 25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain eL41
- eL41
- Chain eS26
- 40S ribosomal protein S26
- Chain uS11
- 40S ribosomal protein S14-A
- Chain uS12
- 40S ribosomal protein S23
- Chain uS15
- 40S ribosomal protein S13
- Chain uS17
- 40S ribosomal protein S11-B
- Chain uS8
- 40S ribosomal protein S22-A
Coloring options: