J4_7OSA_009

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GUG

Length

16 nucleotides

Bulged bases

7OSA|1|25S|A|2657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OSA_009 not in the Motif Atlas

Homologous match to J4_8P9A_019

Geometric discrepancy: 0.08

The information below is about J4_8P9A_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

7OSA|1|25S|C|2654
7OSA|1|25S|U|2655
7OSA|1|25S|A|2656
7OSA|1|25S|A|2657
7OSA|1|25S|G|2658
*
7OSA|1|25S|U|2712
7OSA|1|25S|U|2713
7OSA|1|25S|G|2714
7OSA|1|25S|A|2715
7OSA|1|25S|U|2716
*
7OSA|1|25S|A|2740
7OSA|1|25S|C|2741
7OSA|1|25S|C|2742
*
7OSA|1|25S|G|2751
7OSA|1|25S|U|2752
7OSA|1|25S|G|2753

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL21

BJ4_G0003770.mRNA.1.CDS.1

Chain eL29

60S ribosomal protein L29

Chain eL42

BJ4_G0001880.mRNA.1.CDS.1

Chain uL18

60S ribosomal protein L5