J4_7OSM_012
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 7OSM|1|25S|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OSM_012 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.0878
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7OSM|1|25S|C|2654
7OSM|1|25S|U|2655
7OSM|1|25S|A|2656
7OSM|1|25S|A|2657
7OSM|1|25S|G|2658
*
7OSM|1|25S|U|2712
7OSM|1|25S|U|2713
7OSM|1|25S|G|2714
7OSM|1|25S|A|2715
7OSM|1|25S|U|2716
*
7OSM|1|25S|A|2740
7OSM|1|25S|C|2741
7OSM|1|25S|C|2742
*
7OSM|1|25S|G|2751
7OSM|1|25S|U|2752
7OSM|1|25S|G|2753
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain eL21
- BJ4_G0003770.mRNA.1.CDS.1
- Chain eL29
- 60S ribosomal protein L29
- Chain eL42
- BJ4_G0001880.mRNA.1.CDS.1
- Chain uL18
- 60S ribosomal protein L5
Coloring options: