J4_7OYD_009
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CUAAG*UUGA(PSU)*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 7OYD|1|5|A|4238
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OYD_009 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.2075
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7OYD|1|5|C|4235
7OYD|1|5|U|4236
7OYD|1|5|A|4237
7OYD|1|5|A|4238
7OYD|1|5|G|4239
*
7OYD|1|5|U|4293
7OYD|1|5|U|4294
7OYD|1|5|G|4295
7OYD|1|5|A|4296
7OYD|1|5|PSU|4297
*
7OYD|1|5|A|4321
7OYD|1|5|C|4322
7OYD|1|5|C|4323
*
7OYD|1|5|G|4332
7OYD|1|5|G|4333
7OYD|1|5|G|4334
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain T
- eL21
- Chain b
- 60S ribosomal protein L29
- Chain o
- RPL36A
Coloring options: